Marsico F, Sibilla G, Escobar MS, Chernomoretz A (2024). The Missing Person problem through the lens of information theory. Forensic Science International: Genetics, 70. https://doi.org/10.1016/j.fsigen.2024.103025  Pubmed

Waichman TV, Vercesi ML, Berardino AA, Beckel MS, Giacomini D, Rasetto NB, Herrero M, Di Bella DJ, Arlotta P, Schinder AF, Chernomoretz A. (2024). scX: a user-friendly tool for scRNAseq exploration. Bioinformatics Advances 2024 May 2;4(1):vbae062. doi: https://doi.org/10.1093/bioadv/vbae062    Pubmed

Beckel M, Kaufman B, Yanovsky M, Chernomoretz A. Conserved and divergent signals in 5' splice site sequences across fungi, metazoa and plants. PLoS Computational Biology. 19(10):e1011540. (2023). doi:  10.1371/journal.pcbi.1011540    PubMed

Chernomoretz A, Marsico F, Iserte J, Herrera Piñero M, Escobar MS, Balparda M, Sibilla G. Bayesian networks for DNA-based kinship analysis: Functionality and validation of the GENis missing person identification module. Forensic Sci Int: Genet Suppl Ser. 8:131-132 (2022). doi:10.1016/j.fsigss.2022.10.008

Danko D, et al; International MetaSUB Consortium. A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell. 184(13):3376-3393.e17 (2021). doi: 10.1016/j.cell.2021.05.002.      PubMed

Mancini E, Ravinovich A, Iserte J, Yanovsky M, Chernomoretz A. ASpli: Integrative analysis of splicing landscapes through RNA-Seq assays. Bioinformatics. 37(17):2609-2616 (2021). doi: 10.1093/bioinformatics/btab141.      PubMed

Chernomoretz A, Balpardad M, La Grutta L, Calabrese A, Martinez G, Escobard MS, Sibillad G. GENis, an open-source multi-tier forensic DNA information system. Forensic Science International. 2:100132 (2020).       DOI:10.1016/j.fsir.2020.100132

Urán Landaburu L, Berenstein AJ, Videla S, Maru P, Shanmugam D, Chernomoretz A, Agüero F. TDR Targets 6: driving drug discovery for human pathogens through intensive chemogenomic data integration. Nucleic Acids Res. 48(D1):D992-D1005 (2020). doi: 10.1093/nar/gkz999.      PubMed

Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium, Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J, Chernomoretz A, et al. Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nat Commun. 10(1):2674 (2019). doi: 10.1038/s41467-019-09799-2.      PubMed

Altszyler E, Ventura AC, Colman-Lerner A, Chernomoretz A. Ultrasensitivity in signaling cascades revisited: Linking local and global ultrasensitivity estimations. PLoS One. 12(6):e0180083 (2017). doi: 10.1371/journal.pone.0180083.      PubMed

Mancini E, Iserte J, Yanovsky M, Chernomoretz A. ASpli: Analysis of alternative splicing using RNA-Seq. R package version 1.4.0. (2017). doi: 10.18129/B9.bioc.ASpli Software Packages

Palopoli N, Monzon AM, Parisi G, Chernomoretz A, Agüero F. A report on the “International Society for Computational Biology - Latin America (ISCB-LA)” Bioinformatics Conference 2016. EMBnet. J. 23:e883 (2017). doi: 10.14806/ej.23.0.883.    Report      DOI

Berenstein AJ, Magariños MP, Chernomoretz A, Agüero F. A Multilayer Network Approach for Guiding Drug Repositioning in Neglected Diseases. PLoS Negl Trop Dis. 10:e0004300 (2016). doi: 10.1371/journal.pntd.0004300.        PubMed

        Bracalente C, Ibañez IL, Berenstein A, Notcovich C, Cerda MB, Klamt F, Chernomoretz A, Durán H. Reprogramming human A375 amelanotic melanoma cells by catalase overexpression: Upregulation of antioxidant genes correlates with regression of melanoma malignancy and with malignant progression when downregulated. Oncotarget. 7(27):41154-41171 (2016). doi: 10.18632/oncotarget.9273. PubMed

 

Piñero J, Berenstein A, Gonzalez-Perez A, Chernomoretz A, Furlong LI. Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing. Sci Rep. 6:24570 (2016). doi: 10.1038/srep24570.       PubMed